Variant report

Variant	rs56367965
Chromosome Location	chr6:149482367-149482368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs4308587	0.92[EUR][1000 genomes]
rs4357160	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4535574	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4895778	0.86[EUR][1000 genomes]
rs55635503	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55843534	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56052955	0.92[EUR][1000 genomes]
rs56071715	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56098879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56227122	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57116615	0.93[EUR][1000 genomes]
rs57204178	0.81[AMR][1000 genomes]
rs58260766	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs58500730	0.92[EUR][1000 genomes]
rs60008694	0.86[AFR][1000 genomes]
rs60107332	0.93[EUR][1000 genomes]
rs60424096	0.92[EUR][1000 genomes]
rs61338555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61555942	0.93[EUR][1000 genomes]
rs62425887	0.93[EUR][1000 genomes]
rs62425895	0.93[EUR][1000 genomes]
rs62425899	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62425913	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425916	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425928	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425929	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62428289	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149476200-149487400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:149481400-149482400	Weak transcription	Placenta	Placenta
3	chr6:149481800-149482600	Enhancers	HepG2	liver
4	chr6:149482200-149482600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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