Variant report

Variant	rs57204178
Chromosome Location	chr6:149491615-149491616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149491193..149493250-chr6:149500483..149502434,3	MCF-7	breast:
2	chr6:149491339..149493608-chr6:149496512..149499211,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263481	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55843534	0.81[AMR][1000 genomes]
rs56098879	0.81[AMR][1000 genomes]
rs56367965	0.81[AMR][1000 genomes]
rs61338555	0.81[AMR][1000 genomes]
rs62425913	0.81[AMR][1000 genomes]
rs62425916	0.81[AMR][1000 genomes]
rs62425929	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149488200-149492000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:149488200-149492400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:149488600-149491800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:149488600-149491800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:149488600-149492200	Weak transcription	Fetal Heart	heart
6	chr6:149489800-149492800	Enhancers	Liver	Liver
7	chr6:149489800-149492800	Enhancers	GM12878-XiMat	blood
8	chr6:149490000-149492200	Enhancers	Placenta	Placenta
9	chr6:149490000-149492400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:149490200-149492200	Enhancers	HSMM	muscle
11	chr6:149490600-149492800	Enhancers	K562	blood
12	chr6:149490600-149495800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:149490800-149492000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:149490800-149492600	Enhancers	Rectal Smooth Muscle	rectum
15	chr6:149490800-149495800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:149491000-149492000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:149491000-149492200	Enhancers	Fetal Stomach	stomach
18	chr6:149491000-149492400	Enhancers	Adipose Nuclei	Adipose
19	chr6:149491000-149493200	Enhancers	Fetal Lung	lung
20	chr6:149491200-149492200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:149491200-149492400	Bivalent Enhancer	HepG2	liver
22	chr6:149491400-149491800	Weak transcription	Lung	lung
23	chr6:149491400-149492000	Weak transcription	Right Atrium	heart
24	chr6:149491400-149492000	Enhancers	Hela-S3	cervix
25	chr6:149491400-149492200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:149491400-149496000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:149491600-149492000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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