Variant report

Variant	rs62425916
Chromosome Location	chr6:149473353-149473354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149468238..149470911-chr6:149471382..149475274,5	K562	blood:
2	chr6:149468297..149470497-chr6:149472232..149475176,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs4308587	0.94[EUR][1000 genomes]
rs4357160	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4535574	0.92[EUR][1000 genomes]
rs4895778	0.88[EUR][1000 genomes]
rs55635503	0.94[EUR][1000 genomes]
rs55843534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052955	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs56071715	0.94[EUR][1000 genomes]
rs56098879	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56227122	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56367965	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57116615	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57204178	0.81[AMR][1000 genomes]
rs58260766	0.94[EUR][1000 genomes]
rs58500730	0.94[EUR][1000 genomes]
rs60008694	0.81[EUR][1000 genomes]
rs60107332	0.94[EUR][1000 genomes]
rs60424096	0.94[EUR][1000 genomes]
rs61338555	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61555942	0.94[EUR][1000 genomes]
rs62425887	0.94[EUR][1000 genomes]
rs62425895	0.94[EUR][1000 genomes]
rs62425899	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425928	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62425929	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62428289	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149467600-149476400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:149469400-149474600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:149469800-149474200	Weak transcription	Fetal Thymus	thymus
4	chr6:149470200-149473600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:149470200-149474000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:149470400-149473800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:149470400-149474400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:149470400-149474400	Weak transcription	Dnd41	blood
9	chr6:149470600-149473600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:149470600-149474600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:149470800-149474000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:149470800-149474600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:149470800-149475000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:149471000-149473800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:149471800-149473600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:149471800-149474200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:149472000-149476800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:149472400-149473400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:149472800-149474000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:149473000-149476400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:149473200-149473600	Enhancers	Small Intestine	intestine
22	chr6:149473200-149476600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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