Variant report

Variant	rs62425929
Chromosome Location	chr6:149485965-149485966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4357160	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55843534	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56052955	0.82[AFR][1000 genomes]
rs56098879	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56227122	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56367965	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57204178	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61338555	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62425899	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62425913	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62425916	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62425928	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149476200-149487400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:149482600-149486800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149483400-149488000	Weak transcription	Placenta	Placenta
4	chr6:149484800-149491600	Weak transcription	Aorta	Aorta
5	chr6:149485200-149487200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links