Variant report

Variant	rs56394503
Chromosome Location	chr12:41863529-41863530
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10161143	0.88[ASN][1000 genomes]
rs12298553	0.88[ASN][1000 genomes]
rs12299762	0.86[ASN][1000 genomes]
rs12300549	0.88[ASN][1000 genomes]
rs12305318	0.88[ASN][1000 genomes]
rs12307517	0.84[ASN][1000 genomes]
rs12314242	0.86[ASN][1000 genomes]
rs12314805	0.84[ASN][1000 genomes]
rs1350433	0.88[ASN][1000 genomes]
rs1458155	0.85[ASN][1000 genomes]
rs17129351	0.88[ASN][1000 genomes]
rs17129364	0.85[ASN][1000 genomes]
rs17129405	0.85[ASN][1000 genomes]
rs17129413	0.85[ASN][1000 genomes]
rs1817270	0.88[ASN][1000 genomes]
rs2405924	0.89[ASN][1000 genomes]
rs2897270	0.89[ASN][1000 genomes]
rs3761676	0.85[ASN][1000 genomes]
rs58573939	0.84[ASN][1000 genomes]
rs59662716	0.84[ASN][1000 genomes]
rs60903037	0.88[ASN][1000 genomes]
rs7133340	0.86[ASN][1000 genomes]
rs7297699	0.86[ASN][1000 genomes]
rs73278055	0.85[ASN][1000 genomes]
rs74077591	0.84[ASN][1000 genomes]
rs7966351	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3501985	chr12:41847710-41863530	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41861000-41866600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:41861000-41866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
6	chr12:41862000-41866600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
8	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:41862200-41866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:41863000-41866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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