Variant report

Variant	rs1458155
Chromosome Location	chr12:41894431-41894432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10161143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11180971	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs12298553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12299762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12300549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12305318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12305552	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12307517	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12314242	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12314805	0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1350433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1534277	0.93[JPT][hapmap]
rs17129267	0.94[JPT][hapmap]
rs17129287	0.94[JPT][hapmap]
rs17129295	0.94[JPT][hapmap]
rs17129296	0.93[JPT][hapmap]
rs17129305	0.94[JPT][hapmap]
rs17129347	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17129351	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129364	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17129405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129441	0.92[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1817270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2034922	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2405924	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2897270	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35577124	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3761676	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4635145	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs56394503	0.85[ASN][1000 genomes]
rs57991277	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58573939	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59662716	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60903037	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6582337	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs713288	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7133340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7297699	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7305541	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7307387	0.92[CHB][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs731979	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs73278055	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74077585	0.86[AMR][1000 genomes]
rs74077591	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7960293	0.83[CHB][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs7966351	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv826349	chr12:41878846-41911495	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41877400-41903600	Weak transcription	Ovary	ovary
3	chr12:41887600-41901400	Weak transcription	Brain Substantia Nigra	brain
4	chr12:41890400-41895200	Weak transcription	Psoas Muscle	Psoas
5	chr12:41894000-41900600	Weak transcription	Brain Germinal Matrix	brain

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