Variant report

Variant	rs73278055
Chromosome Location	chr12:41877749-41877750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41866420..41869255-chr12:41877018..41879768,2	K562	blood:

Variant related genes	Relation type
ENSG00000257228	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10161143	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11180971	0.88[AMR][1000 genomes]
rs12298553	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12299762	0.89[ASN][1000 genomes]
rs12300549	0.98[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12305318	0.98[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12305552	0.80[ASN][1000 genomes]
rs12307517	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12314242	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12314805	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1350433	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1458155	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129351	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129364	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17129405	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129413	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129441	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1817270	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2034922	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2405924	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2897270	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35577124	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3761676	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4635145	0.88[AMR][1000 genomes]
rs56394503	0.85[ASN][1000 genomes]
rs57991277	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58573939	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59662716	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60903037	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6582337	0.88[AMR][1000 genomes]
rs713288	0.84[AMR][1000 genomes]
rs7133340	0.89[ASN][1000 genomes]
rs7297699	0.98[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7307387	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs731979	0.88[AMR][1000 genomes]
rs73274484	0.84[AMR][1000 genomes]
rs74077585	0.91[AMR][1000 genomes]
rs74077591	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7960293	0.88[AMR][1000 genomes]
rs7966351	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41877400-41903600	Weak transcription	Ovary	ovary

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