Variant report

Variant	rs60903037
Chromosome Location	chr12:41846828-41846829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10161143	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11180971	0.90[AMR][1000 genomes]
rs12298553	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12299762	0.99[ASN][1000 genomes]
rs12300549	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305318	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305552	0.89[ASN][1000 genomes]
rs12307517	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12314242	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12314805	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1350433	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1379778	0.83[AMR][1000 genomes]
rs1458155	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129364	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17129405	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129413	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129441	0.85[AMR][1000 genomes]
rs1817270	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2034922	0.85[AMR][1000 genomes]
rs2405924	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2897270	0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35577124	0.90[AMR][1000 genomes]
rs3761676	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4635145	0.90[AMR][1000 genomes]
rs56394503	0.88[ASN][1000 genomes]
rs57991277	0.85[AMR][1000 genomes]
rs58573939	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59662716	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6582337	0.90[AMR][1000 genomes]
rs713288	0.86[AMR][1000 genomes]
rs7133340	0.99[ASN][1000 genomes]
rs7297699	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7307387	0.90[AMR][1000 genomes]
rs731979	0.90[AMR][1000 genomes]
rs73274484	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73278055	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74077585	0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74077591	0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7960293	0.90[AMR][1000 genomes]
rs7966351	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41829600-41860600	Weak transcription	Aorta	Aorta
2	chr12:41838000-41852400	Weak transcription	Fetal Brain Male	brain
3	chr12:41838200-41852400	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:41838400-41851600	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41846600-41847000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:41846600-41847000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:41846600-41847400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:41846800-41847200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:41846800-41847200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr12:41846800-41847600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:41846800-41848600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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