Variant report

Variant	rs17129441
Chromosome Location	chr12:41921109-41921110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161143	0.91[CHB][hapmap];0.88[AMR][1000 genomes]
rs11180971	0.90[AMR][1000 genomes]
rs12298553	0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs12299762	0.91[CHB][hapmap]
rs12300549	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs12305318	0.92[CHB][hapmap];0.81[AMR][1000 genomes]
rs12307517	0.83[AMR][1000 genomes]
rs12314805	0.81[CHB][hapmap]
rs1350433	0.91[CHB][hapmap];0.88[AMR][1000 genomes]
rs1458155	0.92[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17129347	0.91[CHB][hapmap]
rs17129351	0.92[CHB][hapmap];0.85[AMR][1000 genomes]
rs17129364	0.91[CHB][hapmap]
rs17129405	0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17129413	0.92[CHB][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1817270	0.91[CHB][hapmap];0.84[AMR][1000 genomes]
rs2034922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2405924	0.84[CHB][hapmap];0.83[AMR][1000 genomes]
rs2897270	0.84[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes]
rs35577124	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3761676	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes]
rs4635145	0.90[AMR][1000 genomes]
rs57991277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58573939	0.83[AMR][1000 genomes]
rs59662716	0.83[AMR][1000 genomes]
rs60903037	0.85[AMR][1000 genomes]
rs6582337	0.90[AMR][1000 genomes]
rs713288	0.86[AMR][1000 genomes]
rs7133340	0.91[CHB][hapmap]
rs7297699	0.81[AMR][1000 genomes]
rs7305541	0.81[CHB][hapmap]
rs7307387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs731979	0.90[AMR][1000 genomes]
rs73278055	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs74077585	0.83[AMR][1000 genomes]
rs74077591	0.83[AMR][1000 genomes]
rs7960293	0.92[CHB][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41916000-41921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:41916000-41927400	Weak transcription	Aorta	Aorta
3	chr12:41916200-41922000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:41916400-41921400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:41916400-41924600	Weak transcription	Colon Smooth Muscle	Colon
6	chr12:41916400-41925200	Weak transcription	Brain Anterior Caudate	brain
7	chr12:41917400-41921200	Weak transcription	HSMMtube	muscle
8	chr12:41917400-41921400	Weak transcription	Placenta	Placenta
9	chr12:41917400-41921400	Weak transcription	HSMM	muscle
10	chr12:41921000-41924600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links