Variant report

Variant	rs17129347
Chromosome Location	chr12:41822073-41822074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10161143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11180971	0.90[AMR][1000 genomes]
rs12298553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12299762	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12300549	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12305552	0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12307517	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12314242	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12314805	0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1350433	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1379778	0.83[AMR][1000 genomes]
rs1458155	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1534277	0.86[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap]
rs17129267	0.93[JPT][hapmap];1.00[MEX][hapmap]
rs17129287	0.93[JPT][hapmap];0.90[YRI][hapmap]
rs17129295	0.93[JPT][hapmap];0.90[YRI][hapmap]
rs17129296	0.93[JPT][hapmap];0.90[YRI][hapmap]
rs17129305	0.93[JPT][hapmap];0.90[YRI][hapmap]
rs17129351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129364	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17129405	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17129441	0.91[CHB][hapmap];0.85[AMR][1000 genomes]
rs1817270	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1868879	1.00[CEU][hapmap]
rs2034922	0.85[AMR][1000 genomes]
rs2405924	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2897270	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35577124	0.90[AMR][1000 genomes]
rs3761676	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4635145	0.91[MEX][hapmap];0.90[AMR][1000 genomes]
rs56394503	0.88[ASN][1000 genomes]
rs57991277	0.85[AMR][1000 genomes]
rs58573939	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59662716	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60903037	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6582337	0.91[MEX][hapmap];0.90[AMR][1000 genomes]
rs713288	0.86[AMR][1000 genomes]
rs7133340	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7297699	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7305541	0.92[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap]
rs7307387	0.91[CHB][hapmap];0.90[AMR][1000 genomes]
rs731979	0.90[AMR][1000 genomes]
rs73274484	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73278055	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs74077585	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs74077591	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7960293	0.82[CHB][hapmap];0.90[AMR][1000 genomes]
rs7966351	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1037987	chr12:41815867-41840251	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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