Variant report

Variant	rs1534277
Chromosome Location	chr12:41759391-41759392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41754640..41756533-chr12:41757713..41760164,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10161143	0.92[JPT][hapmap]
rs11180887	0.90[CHB][hapmap]
rs12298553	0.93[JPT][hapmap]
rs12299762	0.93[JPT][hapmap]
rs12300549	0.93[JPT][hapmap]
rs12305318	0.93[JPT][hapmap]
rs12305552	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap]
rs12314805	0.80[JPT][hapmap]
rs1350433	0.83[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap]
rs1458155	0.93[JPT][hapmap]
rs17129267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129291	0.82[JPT][hapmap]
rs17129295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129347	0.86[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap]
rs17129351	0.93[JPT][hapmap];0.85[YRI][hapmap]
rs17129364	0.86[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs17129405	0.93[JPT][hapmap];0.82[MEX][hapmap]
rs17129413	0.93[JPT][hapmap]
rs1817270	0.83[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs2405924	0.93[JPT][hapmap]
rs2897270	0.93[JPT][hapmap]
rs3761676	0.92[JPT][hapmap]
rs57638447	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7133340	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs7305541	0.86[CHD][hapmap];0.93[JPT][hapmap];0.82[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41755000-41759600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:41755400-41760200	Enhancers	Brain Germinal Matrix	brain
3	chr12:41757000-41759600	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:41757400-41759600	Weak transcription	Fetal Kidney	kidney
5	chr12:41757800-41759800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:41758800-41759400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:41759000-41759400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:41759000-41759600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr12:41759000-41759800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:41759200-41760000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:41759200-41760200	Enhancers	HUES6 Cell Line	embryonic stem cell

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