Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10161143	0.92[JPT][hapmap]
rs11180887	0.91[CHB][hapmap]
rs12298553	0.93[JPT][hapmap]
rs12299762	0.93[JPT][hapmap]
rs12300549	0.93[JPT][hapmap]
rs12305318	0.93[JPT][hapmap]
rs12305552	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12314805	0.81[JPT][hapmap]
rs1350433	0.93[JPT][hapmap]
rs1458155	0.93[JPT][hapmap]
rs1534277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129287	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129295	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129347	0.93[JPT][hapmap];0.90[YRI][hapmap]
rs17129351	0.93[JPT][hapmap];0.88[YRI][hapmap]
rs17129364	0.93[JPT][hapmap]
rs17129405	0.93[JPT][hapmap]
rs17129413	0.93[JPT][hapmap]
rs1817270	0.93[JPT][hapmap]
rs2405924	0.93[JPT][hapmap]
rs2897270	0.93[JPT][hapmap]
rs3761676	0.92[JPT][hapmap];0.91[YRI][hapmap]
rs57638447	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7133340	0.93[JPT][hapmap]
rs7305541	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41760000-41762200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:41760200-41761000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:41760800-41761000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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