Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10161143	0.93[JPT][hapmap]
rs11180887	0.90[CHB][hapmap]
rs12298553	0.93[JPT][hapmap]
rs12299762	0.93[JPT][hapmap]
rs12300549	0.94[JPT][hapmap]
rs12305318	0.94[JPT][hapmap]
rs12305552	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12314805	0.83[JPT][hapmap]
rs1350433	0.93[JPT][hapmap];1.00[MEX][hapmap]
rs1458155	0.94[JPT][hapmap]
rs1534277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17129347	0.93[JPT][hapmap];1.00[MEX][hapmap]
rs17129351	0.94[JPT][hapmap]
rs17129364	0.93[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs17129405	0.93[JPT][hapmap];1.00[MEX][hapmap]
rs17129413	0.94[JPT][hapmap]
rs1817270	0.93[JPT][hapmap];1.00[MEX][hapmap]
rs2405924	0.94[JPT][hapmap]
rs2897270	0.93[JPT][hapmap]
rs3761676	0.93[JPT][hapmap]
rs4635145	0.90[MEX][hapmap]
rs57638447	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6582337	0.90[MEX][hapmap]
rs7133340	0.93[JPT][hapmap]
rs7305541	0.93[JPT][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:41745800-41750400	Weak transcription	Primary hematopoietic stem cells	blood

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