Variant report

Variant	rs56396328
Chromosome Location	chr6:149471776-149471777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149468238..149470911-chr6:149471382..149475274,5	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11155625	0.97[EUR][1000 genomes]
rs11756915	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191264	0.97[EUR][1000 genomes]
rs12191441	0.97[EUR][1000 genomes]
rs12196468	0.97[EUR][1000 genomes]
rs12196841	0.97[EUR][1000 genomes]
rs12197043	0.97[EUR][1000 genomes]
rs12198786	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12200486	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12210293	0.97[EUR][1000 genomes]
rs12210437	0.97[EUR][1000 genomes]
rs12210478	0.96[EUR][1000 genomes]
rs12212173	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12212622	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12216302	0.97[EUR][1000 genomes]
rs2069314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641142	0.97[EUR][1000 genomes]
rs35372633	0.97[EUR][1000 genomes]
rs35426452	0.97[EUR][1000 genomes]
rs3934770	0.97[EUR][1000 genomes]
rs3935038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243485	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243486	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4283906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4355632	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385337	0.97[EUR][1000 genomes]
rs4415179	0.94[EUR][1000 genomes]
rs4495293	0.97[EUR][1000 genomes]
rs4544932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895779	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897081	0.92[EUR][1000 genomes]
rs4897082	0.94[EUR][1000 genomes]
rs4897083	0.93[EUR][1000 genomes]
rs4897084	0.93[EUR][1000 genomes]
rs4897087	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5013008	0.97[EUR][1000 genomes]
rs55794530	0.97[EUR][1000 genomes]
rs55855829	0.96[EUR][1000 genomes]
rs55953746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55991942	0.97[EUR][1000 genomes]
rs56260426	0.97[EUR][1000 genomes]
rs56328446	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56883363	0.96[EUR][1000 genomes]
rs56924759	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57292049	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57478974	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57596511	0.96[EUR][1000 genomes]
rs57937779	0.97[EUR][1000 genomes]
rs58571272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61228112	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61462811	0.97[EUR][1000 genomes]
rs61660880	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62425896	0.97[EUR][1000 genomes]
rs6570942	0.92[EUR][1000 genomes]
rs6570943	0.92[EUR][1000 genomes]
rs6909824	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6934263	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741894	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743161	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749723	0.82[EUR][1000 genomes]
rs7749728	0.83[EUR][1000 genomes]
rs7767040	0.89[EUR][1000 genomes]
rs9377192	0.97[EUR][1000 genomes]
rs9386246	0.97[EUR][1000 genomes]
rs9390658	0.96[EUR][1000 genomes]
rs9688704	0.97[EUR][1000 genomes]
rs9766171	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149467600-149471800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr6:149467600-149472600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:149467600-149476400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:149468200-149472400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:149469400-149474600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:149469800-149471800	Weak transcription	K562	blood
7	chr6:149469800-149474200	Weak transcription	Fetal Thymus	thymus
8	chr6:149470200-149473600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:149470200-149474000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:149470400-149473800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:149470400-149474400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:149470400-149474400	Weak transcription	Dnd41	blood
13	chr6:149470600-149471800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:149470600-149473600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:149470600-149474600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:149470800-149472000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:149470800-149472000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:149470800-149474000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:149470800-149474600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:149470800-149475000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:149471000-149473800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:149471600-149471800	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links