Variant report

Variant	rs62425896
Chromosome Location	chr6:149459218-149459219
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149452280..149455428-chr6:149458542..149462690,3	MCF-7	breast:
2	chr6:149449471..149451391-chr6:149458352..149459927,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11155625	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756915	0.97[EUR][1000 genomes]
rs12191264	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191441	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12196468	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12196841	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12197043	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12198786	0.97[EUR][1000 genomes]
rs12200486	0.96[EUR][1000 genomes]
rs12210293	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12210437	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12210478	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212173	0.96[EUR][1000 genomes]
rs12212622	0.96[EUR][1000 genomes]
rs12216302	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2069314	0.97[EUR][1000 genomes]
rs28641142	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35030564	0.84[AMR][1000 genomes]
rs35372633	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35426452	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3934770	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3935038	0.97[EUR][1000 genomes]
rs4243485	0.97[EUR][1000 genomes]
rs4243486	0.97[EUR][1000 genomes]
rs4283906	0.97[EUR][1000 genomes]
rs4355632	0.97[EUR][1000 genomes]
rs4385337	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4415179	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4495293	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4544932	0.97[EUR][1000 genomes]
rs4624897	0.97[EUR][1000 genomes]
rs4895779	0.97[EUR][1000 genomes]
rs4897081	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4897082	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4897083	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4897084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4897087	0.97[EUR][1000 genomes]
rs5013008	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55794530	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55855829	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55953746	0.97[EUR][1000 genomes]
rs55991942	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56260426	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56328446	0.97[EUR][1000 genomes]
rs56396328	0.97[EUR][1000 genomes]
rs56883363	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56924759	0.97[EUR][1000 genomes]
rs57292049	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57478974	0.97[EUR][1000 genomes]
rs57596511	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57937779	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58571272	0.97[EUR][1000 genomes]
rs61228112	0.97[EUR][1000 genomes]
rs61462811	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61660880	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570941	0.83[AMR][1000 genomes]
rs6570942	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6570943	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6909824	0.97[EUR][1000 genomes]
rs6934263	0.97[EUR][1000 genomes]
rs7741894	0.97[EUR][1000 genomes]
rs7743161	0.96[EUR][1000 genomes]
rs7749723	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7749728	0.84[EUR][1000 genomes]
rs7767040	0.91[EUR][1000 genomes]
rs9377192	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386246	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390658	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9688704	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9766171	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149450000-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149450200-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149454200-149459400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:149456600-149459400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:149456800-149461200	Weak transcription	Fetal Lung	lung
6	chr6:149458000-149461200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:149458000-149461400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:149458600-149461000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:149458800-149459400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:149458800-149459600	Enhancers	Adipose Nuclei	Adipose
11	chr6:149458800-149460800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:149459000-149459400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:149459000-149459400	Flanking Active TSS	Liver	Liver
14	chr6:149459000-149459400	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:149459000-149459600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:149459000-149459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:149459000-149461000	Enhancers	K562	blood
18	chr6:149459000-149461400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:149459000-149461400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:149459000-149462000	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:149459200-149460200	Enhancers	Esophagus	oesophagus
22	chr6:149459200-149460200	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:149459200-149461000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:149459200-149461000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:149459200-149461200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:149459200-149461400	Enhancers	Dnd41	blood

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