Variant report

Variant	rs56405341
Chromosome Location	chr4:130085480-130085481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494318	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10518545	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11099002	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11721729	0.87[ASN][1000 genomes]
rs11732872	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11735242	0.98[ASN][1000 genomes]
rs11737273	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12511471	0.87[ASN][1000 genomes]
rs12511574	0.87[ASN][1000 genomes]
rs12513373	0.87[ASN][1000 genomes]
rs12651143	0.81[AMR][1000 genomes]
rs17431373	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17790511	0.87[ASN][1000 genomes]
rs17790547	0.87[ASN][1000 genomes]
rs17790747	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60645642	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130085000-130085800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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