Variant report
| Variant | rs11721729 |
|---|---|
| Chromosome Location | chr4:130114838-130114839 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:130113691..130115288-chr4:130118999..130121497,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11098996 | 0.84[CHB][hapmap] |
| rs11728895 | 0.84[CHB][hapmap] |
| rs11729109 | 0.84[CHB][hapmap] |
| rs11735242 | 0.90[ASN][1000 genomes] |
| rs11737495 | 0.84[CHB][hapmap] |
| rs12500938 | 0.84[CHB][hapmap] |
| rs12505609 | 0.84[CHB][hapmap] |
| rs12509933 | 0.84[CHB][hapmap] |
| rs12511471 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12511574 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12513373 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13107038 | 0.84[CHB][hapmap] |
| rs13134769 | 0.84[CHB][hapmap] |
| rs13148505 | 0.84[CHB][hapmap] |
| rs1446996 | 0.84[CHB][hapmap] |
| rs17014099 | 0.84[CHB][hapmap] |
| rs17185515 | 0.84[CHB][hapmap] |
| rs17351999 | 0.84[CHB][hapmap] |
| rs17789626 | 0.84[CHB][hapmap] |
| rs17790511 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17790547 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2037073 | 0.84[CHB][hapmap] |
| rs56405341 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869258 | chr4:129191619-130138148 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv534538 | chr4:129799138-130431688 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879931 | chr4:129939775-130178102 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:130114200-130115400 | Enhancers | Liver | Liver |
