Variant report

Variant	rs11735242
Chromosome Location	chr4:130089540-130089541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11098996	1.00[YRI][hapmap]
rs11721729	0.90[ASN][1000 genomes]
rs11725174	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11728895	1.00[LWK][hapmap]
rs11728986	0.81[EUR][1000 genomes]
rs11729109	1.00[CHB][hapmap]
rs11736968	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11737003	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11737495	1.00[YRI][hapmap]
rs11946237	0.81[EUR][1000 genomes]
rs12500938	1.00[YRI][hapmap]
rs12501507	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12505162	0.80[AMR][1000 genomes]
rs12505609	1.00[YRI][hapmap]
rs12509933	1.00[YRI][hapmap]
rs12511471	0.90[ASN][1000 genomes]
rs12511574	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12513373	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13107038	1.00[YRI][hapmap]
rs13115576	1.00[LWK][hapmap]
rs13124420	1.00[YRI][hapmap]
rs13134769	1.00[LWK][hapmap]
rs13142673	0.85[AMR][1000 genomes]
rs13144594	1.00[YRI][hapmap]
rs13148505	1.00[YRI][hapmap]
rs17014099	1.00[YRI][hapmap]
rs17014259	0.81[EUR][1000 genomes]
rs17185515	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17351999	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs17789626	0.92[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17790511	0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17790547	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2037073	1.00[CHB][hapmap]
rs56405341	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130089000-130089600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr4:130089200-130089600	Enhancers	Fetal Heart	heart
3	chr4:130089400-130089600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:130089400-130089600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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