Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11098996	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs11721729	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728895	0.91[CHB][hapmap]
rs11729109	0.83[CHB][hapmap]
rs11735242	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11737495	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12500938	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12505609	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12509933	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs12511471	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511574	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513373	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107038	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs13115576	0.91[CHB][hapmap]
rs13134769	0.91[CHB][hapmap]
rs13144594	1.00[YRI][hapmap]
rs13148505	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs1446996	0.91[CHB][hapmap]
rs17014099	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17185515	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17351999	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17789626	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs17790511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037073	0.83[CHB][hapmap]
rs56405341	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130100200-130101000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:130100200-130101400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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