Variant report

Variant	rs564533096
Chromosome Location	chr9:86535044-86535045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:86535039-86535155	MCF-7	breast:	n/a	n/a
2	POLR2A	chr9:86534908-86535183	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:86534912-86535153	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:86534762-86536930	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr9:86532204-86536815	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:86236616..86242493-chr9:86533666..86537484,7	MCF-7	breast:
2	chr9:86533247..86537973-chr9:86593370..86597981,20	MCF-7	breast:
3	chr9:86431003..86433746-chr9:86534377..86536332,2	K562	blood:
4	chr9:86321176..86323111-chr9:86534764..86537575,5	MCF-7	breast:
5	chr9:86534503..86538702-chr9:86568820..86574555,7	MCF-7	breast:
6	chr9:86237271..86239294-chr9:86534482..86537409,3	MCF-7	breast:
7	chr9:86533593..86537892-chr9:86593047..86598677,10	K562	blood:
8	chr9:86534520..86537940-chr9:86592614..86595774,6	K562	blood:
9	chr9:86534003..86537844-chr9:86570557..86574103,8	K562	blood:
10	chr9:86534814..86537259-chr9:86954011..86956598,2	MCF-7	breast:
11	chr9:86531254..86532896-chr9:86534357..86536311,2	MCF-7	breast:
12	chr9:86321510..86324086-chr9:86534187..86535894,2	K562	blood:
13	chr9:86529939..86532744-chr9:86534062..86535993,2	MCF-7	breast:
14	chr9:86533979..86537502-chr9:86594012..86596999,11	MCF-7	breast:
15	chr9:86534561..86538164-chr9:86570673..86573880,3	K562	blood:
16	chr9:86321248..86324502-chr9:86534491..86537588,5	MCF-7	breast:

No data

Variant related genes	Relation type
KIF27	TF binding region
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction
ENSG00000165113	Chromatin interaction
ENSG00000197506	Chromatin interaction
ENSG00000178966	Chromatin interaction
ENSG00000148057	Chromatin interaction
ENSG00000165118	Chromatin interaction
ENSG00000165115	Chromatin interaction
ENSG00000165119	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
2	chr9:86461600-86535400	Weak transcription	Ovary	ovary
3	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
4	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
5	chr9:86481000-86535800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:86491000-86535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:86491200-86535200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:86500200-86535200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:86500200-86535200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:86500200-86535600	Weak transcription	Lung	lung
11	chr9:86508200-86535600	Weak transcription	Esophagus	oesophagus
12	chr9:86512400-86535400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:86512600-86535400	Weak transcription	Placenta	Placenta
14	chr9:86517400-86535200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr9:86518800-86535200	Weak transcription	Thymus	Thymus
16	chr9:86519000-86535400	Weak transcription	Fetal Stomach	stomach
17	chr9:86520400-86535400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:86525600-86535600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:86525600-86535600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:86526400-86535200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:86531600-86535200	Weak transcription	Osteobl	bone
22	chr9:86531600-86535400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:86531800-86535200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:86532200-86535200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:86532400-86535200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:86532400-86535200	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:86532800-86535200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:86532800-86535400	Weak transcription	Psoas Muscle	Psoas
29	chr9:86533200-86535400	Weak transcription	HSMM	muscle
30	chr9:86533400-86535200	Weak transcription	K562	blood
31	chr9:86534600-86535400	Enhancers	Fetal Brain Male	brain
32	chr9:86534800-86535200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:86534800-86535200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr9:86534800-86535400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:86534800-86535400	Enhancers	Pancreas	Pancrea
36	chr9:86535000-86535200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:86535000-86535200	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr9:86535000-86535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr9:86535000-86535200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr9:86535000-86535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:86535000-86535200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:86535000-86535200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr9:86535000-86535200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:86535000-86535200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:86535000-86535200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:86535000-86535200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr9:86535000-86535200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:86535000-86535200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:86535000-86535200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr9:86535000-86535200	Enhancers	Brain Angular Gyrus	brain

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