Variant report

Variant	rs56661459
Chromosome Location	chr2:86638636-86638637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17027263	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3827551	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56988639	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57145635	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57165237	0.83[AFR][1000 genomes]
rs57503894	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57933210	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58446119	0.96[AFR][1000 genomes]
rs58522053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58801770	0.96[AFR][1000 genomes]
rs59676747	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59744815	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60177707	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60386015	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60904419	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61231657	0.91[ASN][1000 genomes]
rs61627769	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6547678	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547679	0.90[AFR][1000 genomes]
rs6547682	0.96[AFR][1000 genomes]
rs6750561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606932	0.90[AFR][1000 genomes]
rs7607280	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86638600-86638800	Enhancers	Placenta	Placenta
2	chr2:86638600-86639000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:86638600-86639200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:86638600-86640600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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