Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86629640..86632102-chr2:86632580..86634181,2	K562	blood:
2	chr2:86630182..86633982-chr2:86666784..86669925,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115548	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17027263	0.88[EUR][1000 genomes]
rs3827551	0.86[ASN][1000 genomes]
rs56661459	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56988639	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57145635	0.88[EUR][1000 genomes]
rs57503894	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57933210	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58446119	0.90[AFR][1000 genomes]
rs58522053	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58801770	0.90[AFR][1000 genomes]
rs59676747	0.94[ASN][1000 genomes]
rs59744815	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60177707	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60386015	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60904419	0.94[ASN][1000 genomes]
rs61231657	0.91[ASN][1000 genomes]
rs61627769	0.94[ASN][1000 genomes]
rs6547678	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547679	0.84[AFR][1000 genomes]
rs6547682	0.90[AFR][1000 genomes]
rs6750561	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567955	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606682	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606932	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: