Variant report

Variant	rs60904419
Chromosome Location	chr2:86592729-86592730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3827551	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56661459	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56988639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57503894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57933210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58522053	0.94[ASN][1000 genomes]
rs59676747	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59744815	0.94[ASN][1000 genomes]
rs60177707	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60386015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61231657	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61627769	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6547678	0.94[ASN][1000 genomes]
rs6750561	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7567955	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7606682	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7607280	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86588400-86594200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:86588400-86595200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:86588600-86593000	Weak transcription	Fetal Intestine Small	intestine
4	chr2:86588800-86593400	Weak transcription	Fetal Intestine Large	intestine
5	chr2:86592400-86593000	Enhancers	Pancreas	Pancrea
6	chr2:86592600-86593200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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