Variant report
| Variant | rs61627769 |
|---|---|
| Chromosome Location | chr2:86573648-86573649 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86572451..86574129-chr2:86595066..86597224,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs17027263 | 0.80[EUR][1000 genomes] |
| rs3827551 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56661459 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56988639 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57145635 | 0.80[EUR][1000 genomes] |
| rs57503894 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57933210 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58522053 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59676747 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59744815 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60177707 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60386015 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60904419 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61231657 | 0.97[ASN][1000 genomes] |
| rs6547678 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6750561 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7567955 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7606682 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7607280 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3412938 | chr2:86370969-86867936 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 77 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86573600-86574000 | Enhancers | Fetal Intestine Large | intestine |
