Variant report

Variant	rs56668001
Chromosome Location	chr17:17302881-17302882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17298469..17300078-chr17:17302432..17304421,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1569040	0.88[ASN][1000 genomes]
rs1569042	0.92[ASN][1000 genomes]
rs16961654	0.90[ASN][1000 genomes]
rs16961656	0.85[ASN][1000 genomes]
rs2089461	0.83[ASN][1000 genomes]
rs34243760	0.90[ASN][1000 genomes]
rs34389187	0.90[ASN][1000 genomes]
rs34500456	0.90[ASN][1000 genomes]
rs35815169	0.90[ASN][1000 genomes]
rs56145552	0.90[ASN][1000 genomes]
rs61246739	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7211180	0.83[ASN][1000 genomes]
rs8069731	0.92[ASN][1000 genomes]
rs8079827	0.90[ASN][1000 genomes]
rs8080681	0.90[ASN][1000 genomes]
rs9907592	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17296000-17304600	Weak transcription	Gastric	stomach
2	chr17:17296400-17305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:17296600-17305600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:17296600-17305800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:17296600-17306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:17297200-17306600	Enhancers	Dnd41	blood
7	chr17:17298600-17306800	Enhancers	Fetal Thymus	thymus
8	chr17:17299200-17305800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:17299600-17304600	Weak transcription	Pancreas	Pancrea
10	chr17:17299800-17310400	Enhancers	Primary hematopoietic stem cells	blood
11	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:17301200-17303200	Enhancers	Fetal Muscle Trunk	muscle
14	chr17:17301200-17303200	Enhancers	Fetal Muscle Leg	muscle
15	chr17:17301400-17303000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:17301400-17303200	Enhancers	Placenta	Placenta
17	chr17:17301400-17303200	Enhancers	Lung	lung
18	chr17:17301400-17304000	Enhancers	Primary T cells from cord blood	blood
19	chr17:17301400-17306400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:17301400-17307000	Enhancers	Primary T cells fromperipheralblood	blood
21	chr17:17301400-17307000	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr17:17301600-17303000	Enhancers	Primary B cells from cord blood	blood
23	chr17:17301600-17303000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr17:17301600-17303000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr17:17301600-17303200	Enhancers	Brain Germinal Matrix	brain
26	chr17:17301600-17303200	Enhancers	Osteobl	bone
27	chr17:17301600-17303600	Enhancers	Adipose Nuclei	Adipose
28	chr17:17301600-17306800	Enhancers	Thymus	Thymus
29	chr17:17301800-17303000	Enhancers	Primary B cells from peripheral blood	blood
30	chr17:17301800-17303200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:17301800-17303800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr17:17301800-17305800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr17:17302000-17303000	Weak transcription	Right Ventricle	heart
34	chr17:17302000-17304600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr17:17302000-17304600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
37	chr17:17302200-17305600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr17:17302200-17307400	Weak transcription	Brain Anterior Caudate	brain
39	chr17:17302400-17303200	Enhancers	NHDF-Ad	bronchial
40	chr17:17302400-17305800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr17:17302400-17305800	Weak transcription	NH-A	brain
42	chr17:17302400-17306600	Weak transcription	Fetal Lung	lung
43	chr17:17302400-17306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr17:17302600-17303000	Weak transcription	Hela-S3	cervix
45	chr17:17302600-17303200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:17302600-17303200	Enhancers	Left Ventricle	heart
47	chr17:17302800-17303600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr17:17302800-17304200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr17:17302800-17304600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr17:17302800-17304600	Weak transcription	HSMM	muscle

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