Variant report

Variant	rs8079827
Chromosome Location	chr17:17307972-17307973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17306217..17309179-chr17:17398363..17401256,2	MCF-7	breast:
2	chr17:17304591..17306249-chr17:17306462..17308766,2	MCF-7	breast:
3	chr17:17305801..17308448-chr17:17312032..17314293,2	K562	blood:
4	chr17:17297235..17298837-chr17:17306470..17308847,2	K562	blood:

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1569040	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1569042	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16961654	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16961656	0.91[ASN][1000 genomes]
rs2089461	0.89[ASN][1000 genomes]
rs34243760	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389187	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34500456	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35815169	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56145552	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56668001	0.90[ASN][1000 genomes]
rs61246739	0.90[ASN][1000 genomes]
rs7211180	0.89[ASN][1000 genomes]
rs8069731	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8080681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907592	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv1010969	chr17:17304118-17308747	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17299800-17310400	Enhancers	Primary hematopoietic stem cells	blood
2	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
3	chr17:17305000-17308000	Enhancers	HUVEC	blood vessel
4	chr17:17305000-17311400	Weak transcription	Pancreas	Pancrea
5	chr17:17305200-17309600	Weak transcription	Esophagus	oesophagus
6	chr17:17305800-17308000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:17305800-17309200	Enhancers	Primary B cells from peripheral blood	blood
8	chr17:17306000-17308400	Enhancers	Primary B cells from cord blood	blood
9	chr17:17306000-17310000	Enhancers	Fetal Muscle Leg	muscle
10	chr17:17306200-17309600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:17306400-17308000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr17:17306400-17308400	Enhancers	Fetal Brain Female	brain
13	chr17:17306400-17308800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr17:17306400-17309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:17306600-17308000	Enhancers	Fetal Brain Male	brain
16	chr17:17306600-17308200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr17:17306600-17308400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr17:17306600-17309200	Weak transcription	HepG2	liver
19	chr17:17306600-17315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr17:17306800-17308000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr17:17306800-17308000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:17306800-17308000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr17:17306800-17308000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr17:17306800-17308000	Flanking Active TSS	Fetal Thymus	thymus
25	chr17:17306800-17308200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr17:17306800-17308200	Flanking Active TSS	Thymus	Thymus
27	chr17:17306800-17309200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:17306800-17309200	Weak transcription	Hela-S3	cervix
29	chr17:17307000-17308000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr17:17307000-17311400	Weak transcription	Osteobl	bone
31	chr17:17307200-17316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:17307400-17308000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr17:17307400-17308000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
34	chr17:17307400-17308200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr17:17307400-17308200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr17:17307600-17308000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr17:17307600-17308800	Flanking Active TSS	Dnd41	blood
38	chr17:17307600-17309800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr17:17307600-17310000	Enhancers	Primary T cells fromperipheralblood	blood
40	chr17:17307600-17310200	Enhancers	Brain Germinal Matrix	brain
41	chr17:17307800-17308000	Enhancers	Brain Substantia Nigra	brain
42	chr17:17307800-17308800	Weak transcription	Brain Anterior Caudate	brain
43	chr17:17307800-17308800	Enhancers	Fetal Muscle Trunk	muscle
44	chr17:17307800-17309000	Weak transcription	Adipose Nuclei	Adipose
45	chr17:17307800-17309200	Weak transcription	Spleen	Spleen
46	chr17:17307800-17309600	Weak transcription	Lung	lung
47	chr17:17307800-17309800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr17:17307800-17309800	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr17:17307800-17310400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr17:17307800-17310400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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