Variant report

Variant	rs8069731
Chromosome Location	chr17:17306270-17306271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17306217..17309179-chr17:17398363..17401256,2	MCF-7	breast:
2	chr17:17304304..17307291-chr17:17324984..17326746,2	K562	blood:
3	chr17:17299943..17302220-chr17:17305018..17306768,2	K562	blood:
4	chr17:17305801..17308448-chr17:17312032..17314293,2	K562	blood:

Variant related genes	Relation type
ENSG00000227158	Chromatin interaction
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1569040	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1569042	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961654	0.95[ASN][1000 genomes]
rs16961656	0.86[ASN][1000 genomes]
rs2089461	0.84[ASN][1000 genomes]
rs34243760	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34389187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34500456	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35815169	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56145552	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56668001	0.92[ASN][1000 genomes]
rs61246739	0.92[ASN][1000 genomes]
rs7211180	0.84[ASN][1000 genomes]
rs8079827	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8080681	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9907592	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv1010969	chr17:17304118-17308747	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17297200-17306600	Enhancers	Dnd41	blood
2	chr17:17298600-17306800	Enhancers	Fetal Thymus	thymus
3	chr17:17299800-17310400	Enhancers	Primary hematopoietic stem cells	blood
4	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr17:17300200-17306800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:17301400-17306400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:17301400-17307000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:17301400-17307000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:17301600-17306800	Enhancers	Thymus	Thymus
10	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
11	chr17:17302200-17307400	Weak transcription	Brain Anterior Caudate	brain
12	chr17:17302400-17306600	Weak transcription	Fetal Lung	lung
13	chr17:17302400-17306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:17303200-17306800	Weak transcription	Lung	lung
15	chr17:17303200-17307800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:17303600-17306800	Weak transcription	Adipose Nuclei	Adipose
17	chr17:17304200-17306800	Enhancers	Hela-S3	cervix
18	chr17:17304400-17306600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr17:17304400-17307000	Enhancers	Osteobl	bone
20	chr17:17304400-17307600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr17:17304600-17306600	Enhancers	HepG2	liver
22	chr17:17304600-17307600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:17304600-17307800	Enhancers	HSMM	muscle
24	chr17:17304800-17306600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr17:17304800-17307800	Enhancers	HSMMtube	muscle
26	chr17:17305000-17306800	Weak transcription	Spleen	Spleen
27	chr17:17305000-17307000	Enhancers	Brain Germinal Matrix	brain
28	chr17:17305000-17308000	Enhancers	HUVEC	blood vessel
29	chr17:17305000-17311400	Weak transcription	Pancreas	Pancrea
30	chr17:17305200-17306600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:17305200-17306600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr17:17305200-17307400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr17:17305200-17309600	Weak transcription	Esophagus	oesophagus
34	chr17:17305600-17306800	Enhancers	Primary T cells from cord blood	blood
35	chr17:17305600-17306800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr17:17305600-17306800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr17:17305600-17306800	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr17:17305600-17307600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr17:17305800-17306400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr17:17305800-17306600	Enhancers	NH-A	brain
41	chr17:17305800-17306800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr17:17305800-17306800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr17:17305800-17306800	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr17:17305800-17307000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr17:17305800-17308000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr17:17305800-17309200	Enhancers	Primary B cells from peripheral blood	blood
47	chr17:17306000-17306600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr17:17306000-17306800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr17:17306000-17307400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr17:17306000-17307400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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