Variant report

Variant	rs56780164
Chromosome Location	chr6:64939780-64939781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6941680	1.00[AMR][1000 genomes]
rs73763355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766031	1.00[AMR][1000 genomes]
rs73766032	1.00[AMR][1000 genomes]
rs73766036	1.00[AMR][1000 genomes]
rs73766038	1.00[AMR][1000 genomes]
rs73766043	1.00[AMR][1000 genomes]
rs73766066	1.00[AMR][1000 genomes]
rs7757774	1.00[AMR][1000 genomes]
rs7774242	1.00[AMR][1000 genomes]
rs9784866	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015718	chr6:64821273-65479726	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1033519	chr6:64843989-65017528	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1024558	chr6:64876263-65000031	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv885993	chr6:64885858-65050050	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv885994	chr6:64912098-64961573	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv885995	chr6:64914258-65050050	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv885996	chr6:64914258-65081343	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv885997	chr6:64920494-64998321	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64929000-64943800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:64935000-64940400	Weak transcription	Fetal Brain Female	brain
3	chr6:64939400-64939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:64939400-64939800	Enhancers	Fetal Lung	lung
5	chr6:64939400-64940000	Enhancers	Fetal Heart	heart
6	chr6:64939600-64941000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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