Variant report

Variant	rs56805036
Chromosome Location	chr10:49442080-49442081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49433973..49437325-chr10:49440787..49445569,4	K562	blood:
2	chr10:49441878..49444791-chr10:49513078..49515110,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10508900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17009540	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17009545	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17010723	0.90[EUR][1000 genomes]
rs17011006	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011019	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011052	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011060	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17770021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56104390	0.90[EUR][1000 genomes]
rs58555605	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61108444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61204436	0.91[EUR][1000 genomes]
rs61450644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61840039	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840043	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840044	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840045	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840047	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840495	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61840496	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61840497	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61840503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61840510	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831864	chr10:49299274-49450299	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49441000-49442200	Enhancers	Brain Substantia Nigra	brain
2	chr10:49441000-49444200	Weak transcription	Fetal Thymus	thymus
3	chr10:49441200-49442600	Enhancers	Right Ventricle	heart
4	chr10:49441400-49443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:49441600-49446800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:49441800-49442200	Enhancers	Brain Hippocampus Middle	brain
7	chr10:49441800-49442200	Enhancers	Fetal Heart	heart
8	chr10:49441800-49442200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr10:49441800-49442200	Enhancers	Left Ventricle	heart
10	chr10:49442000-49442200	Enhancers	Brain Anterior Caudate	brain
11	chr10:49442000-49442200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:49442000-49446800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:49442000-49446800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:49442000-49455200	Weak transcription	Right Atrium	heart

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