Variant report

Variant	rs10508900
Chromosome Location	chr10:49456053-49456054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49455171..49457750-chr10:49459859..49462154,2	K562	blood:
2	chr10:49455171..49459058-chr10:49459196..49462154,3	K562	blood:
3	chr10:49455241..49456959-chr10:49462949..49465290,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170324	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11819269	0.87[TSI][hapmap]
rs166817	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs17009533	0.84[EUR][1000 genomes]
rs17009537	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs17009540	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17009545	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010208	0.82[CEU][hapmap]
rs17010407	0.82[CEU][hapmap]
rs17010430	0.82[CEU][hapmap]
rs17010447	0.82[CEU][hapmap]
rs17010454	0.82[CEU][hapmap]
rs17010455	0.82[CEU][hapmap]
rs17010723	0.87[TSI][hapmap]
rs17011006	1.00[AMR][1000 genomes]
rs17011019	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs17011052	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs17011060	0.82[CEU][hapmap];1.00[AMR][1000 genomes]
rs17770021	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1881733	0.87[TSI][hapmap]
rs1881734	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs204006	0.84[EUR][1000 genomes]
rs3730160	1.00[CEU][hapmap]
rs56805036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58555605	0.81[AMR][1000 genomes]
rs61108444	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61450644	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61840039	1.00[AMR][1000 genomes]
rs61840043	1.00[AMR][1000 genomes]
rs61840044	1.00[AMR][1000 genomes]
rs61840045	1.00[AMR][1000 genomes]
rs61840047	1.00[AMR][1000 genomes]
rs61840494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61840495	1.00[AMR][1000 genomes]
rs61840496	1.00[AMR][1000 genomes]
rs61840497	1.00[AMR][1000 genomes]
rs61840499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61840503	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61840508	0.81[EUR][1000 genomes]
rs61840510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296380	0.81[EUR][1000 genomes]
rs7915333	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49450800-49459400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:49451600-49459200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49451800-49458200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:49451800-49459400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:49452000-49459400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:49454200-49456200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:49454600-49457600	Enhancers	Right Ventricle	heart
8	chr10:49454800-49457800	Enhancers	Fetal Heart	heart
9	chr10:49455200-49456200	Enhancers	Right Atrium	heart
10	chr10:49455400-49456800	Enhancers	Fetal Lung	lung
11	chr10:49455600-49456200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:49455600-49458400	Enhancers	Fetal Thymus	thymus
13	chr10:49455800-49456200	Enhancers	Primary T cells from cord blood	blood
14	chr10:49455800-49456200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:49455800-49456200	Enhancers	Ovary	ovary
16	chr10:49455800-49456400	Enhancers	GM12878-XiMat	blood
17	chr10:49455800-49457000	Weak transcription	Left Ventricle	heart
18	chr10:49455800-49459400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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