Variant report

Variant	rs17010430
Chromosome Location	chr10:49592752-49592753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
2	chr10:49592537..49595481-chr10:49609552..49611055,2	K562	blood:
3	chr10:49584975..49587441-chr10:49590002..49593282,3	K562	blood:
4	chr10:49584866..49587796-chr10:49589937..49592814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10508900	0.82[CEU][hapmap]
rs17009540	0.82[CEU][hapmap]
rs17010208	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17010407	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010447	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17010454	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17010455	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17010496	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17697960	0.80[YRI][hapmap]
rs17697972	1.00[EUR][1000 genomes]
rs1867586	0.92[EUR][1000 genomes]
rs3730160	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3855904	0.88[EUR][1000 genomes]
rs57508520	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58676018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60992548	1.00[EUR][1000 genomes]
rs61838668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838669	0.96[EUR][1000 genomes]
rs61838672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838673	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838677	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838697	1.00[EUR][1000 genomes]
rs61838698	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838700	1.00[EUR][1000 genomes]
rs61838701	1.00[EUR][1000 genomes]
rs61838703	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61838704	1.00[EUR][1000 genomes]
rs61838707	0.92[EUR][1000 genomes]
rs61838708	0.88[EUR][1000 genomes]
rs61838722	0.84[EUR][1000 genomes]
rs61838723	0.84[EUR][1000 genomes]
rs61838724	0.80[EUR][1000 genomes]
rs61838726	0.84[EUR][1000 genomes]
rs61838728	0.84[EUR][1000 genomes]
rs61838730	0.84[EUR][1000 genomes]
rs61838731	0.84[EUR][1000 genomes]
rs61838735	0.84[EUR][1000 genomes]
rs61840548	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61840549	0.92[EUR][1000 genomes]
rs61840550	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61840556	0.88[EUR][1000 genomes]
rs61840558	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7089077	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49590200-49592800	Weak transcription	HSMMtube	muscle
3	chr10:49590200-49596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:49590200-49596800	Weak transcription	Left Ventricle	heart
5	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:49590200-49598800	Weak transcription	A549	lung
7	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
8	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:49591000-49592800	Enhancers	HMEC	breast
11	chr10:49591000-49593400	Enhancers	Fetal Intestine Large	intestine
12	chr10:49591200-49592800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:49591200-49592800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:49591200-49593000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:49591200-49593000	Enhancers	K562	blood
16	chr10:49591200-49593200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:49591200-49593200	Enhancers	Fetal Heart	heart
18	chr10:49591200-49595400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr10:49591400-49592800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:49591600-49592800	Weak transcription	HSMM	muscle
22	chr10:49591600-49592800	Weak transcription	Osteobl	bone
23	chr10:49591800-49597200	Weak transcription	NHDF-Ad	bronchial
24	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:49592000-49592800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr10:49592000-49593400	Enhancers	Ovary	ovary
27	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
28	chr10:49592200-49592800	Weak transcription	Right Atrium	heart
29	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:49592400-49592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:49592400-49593600	Enhancers	Fetal Kidney	kidney
32	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:49592600-49593000	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:49592600-49593200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:49592600-49593200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:49592600-49593200	Enhancers	Fetal Lung	lung
37	chr10:49592600-49593600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr10:49592600-49595800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:49592600-49597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:49592600-49597600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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