Variant report

Variant	rs17010447
Chromosome Location	chr10:49624709-49624710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49624602..49625302-chr10:49652334..49653265,2	MCF-7	breast:
2	chr10:49619514..49622153-chr10:49622504..49625064,2	K562	blood:
3	chr10:49598612..49601205-chr10:49623829..49626212,2	K562	blood:
4	chr10:49574275..49576561-chr10:49624083..49626541,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10508900	0.82[CEU][hapmap]
rs17009540	0.82[CEU][hapmap]
rs17010208	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17010407	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17010430	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17010454	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010455	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17010496	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17697972	1.00[EUR][1000 genomes]
rs1867586	0.92[EUR][1000 genomes]
rs3730160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3855904	0.88[EUR][1000 genomes]
rs57508520	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58676018	1.00[EUR][1000 genomes]
rs60992548	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838668	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838669	0.96[EUR][1000 genomes]
rs61838672	1.00[EUR][1000 genomes]
rs61838673	1.00[EUR][1000 genomes]
rs61838677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838698	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838700	1.00[EUR][1000 genomes]
rs61838701	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838703	0.96[EUR][1000 genomes]
rs61838704	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838707	0.92[EUR][1000 genomes]
rs61838708	0.88[EUR][1000 genomes]
rs61838722	0.84[EUR][1000 genomes]
rs61838723	0.84[EUR][1000 genomes]
rs61838724	0.80[EUR][1000 genomes]
rs61838726	0.84[EUR][1000 genomes]
rs61838728	0.84[EUR][1000 genomes]
rs61838730	0.84[EUR][1000 genomes]
rs61838731	0.84[EUR][1000 genomes]
rs61838735	0.84[EUR][1000 genomes]
rs61840548	0.92[EUR][1000 genomes]
rs61840549	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61840550	0.92[EUR][1000 genomes]
rs61840556	0.88[EUR][1000 genomes]
rs61840558	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7089077	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
6	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
7	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
8	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:49619600-49628000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:49619600-49634000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:49619600-49645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:49619800-49634400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:49620600-49643400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:49620800-49626000	Weak transcription	Ovary	ovary
15	chr10:49620800-49634000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:49620800-49634400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:49620800-49643400	Weak transcription	Right Ventricle	heart
18	chr10:49620800-49646800	Weak transcription	Hela-S3	cervix
19	chr10:49620800-49647000	Weak transcription	NHDF-Ad	bronchial
20	chr10:49620800-49647600	Weak transcription	Colonic Mucosa	Colon
21	chr10:49620800-49652400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:49621000-49625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:49621000-49638400	Weak transcription	Fetal Stomach	stomach
25	chr10:49621000-49638800	Weak transcription	Brain Germinal Matrix	brain
26	chr10:49621200-49625000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:49621200-49626000	Weak transcription	Brain Anterior Caudate	brain
28	chr10:49621200-49632000	Weak transcription	Psoas Muscle	Psoas
29	chr10:49621200-49638400	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:49621200-49638800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:49621200-49641600	Weak transcription	Small Intestine	intestine
32	chr10:49621200-49641800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:49621200-49643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:49621200-49647000	Weak transcription	Fetal Intestine Small	intestine
35	chr10:49621200-49647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:49621200-49647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:49621400-49624800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:49621400-49625400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:49621400-49626000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:49621400-49631000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:49621400-49633200	Weak transcription	Primary B cells from cord blood	blood
43	chr10:49621400-49634000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:49621400-49634000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:49621400-49634000	Weak transcription	Liver	Liver
46	chr10:49621400-49634000	Weak transcription	Placenta	Placenta
47	chr10:49621400-49634000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:49621400-49634000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:49621400-49634400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:49621400-49634600	Weak transcription	Primary B cells from peripheral blood	blood

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