Variant report

Variant	rs3730160
Chromosome Location	chr10:49635072-49635073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49632219..49636851-chr10:49637055..49643743,11	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10508900	1.00[CEU][hapmap]
rs17009540	1.00[CEU][hapmap]
rs17009545	0.82[CEU][hapmap]
rs17010208	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17010407	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17010430	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17010447	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17010454	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010455	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17010496	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17697972	1.00[EUR][1000 genomes]
rs1867586	0.92[EUR][1000 genomes]
rs3855904	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57508520	1.00[EUR][1000 genomes]
rs58676018	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60992548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838668	1.00[EUR][1000 genomes]
rs61838669	0.96[EUR][1000 genomes]
rs61838672	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838673	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61838677	1.00[EUR][1000 genomes]
rs61838697	1.00[EUR][1000 genomes]
rs61838698	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838700	1.00[EUR][1000 genomes]
rs61838701	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838703	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61838704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61838707	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61838708	0.88[EUR][1000 genomes]
rs61838722	0.84[EUR][1000 genomes]
rs61838723	0.84[EUR][1000 genomes]
rs61838724	0.80[EUR][1000 genomes]
rs61838726	0.84[EUR][1000 genomes]
rs61838728	0.84[EUR][1000 genomes]
rs61838730	0.84[EUR][1000 genomes]
rs61838731	0.84[EUR][1000 genomes]
rs61838735	0.84[EUR][1000 genomes]
rs61840548	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61840549	0.92[EUR][1000 genomes]
rs61840550	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61840556	0.88[EUR][1000 genomes]
rs61840558	1.00[EUR][1000 genomes]
rs7089077	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
5	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
6	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
7	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:49619600-49645600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:49620600-49643400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:49620800-49643400	Weak transcription	Right Ventricle	heart
11	chr10:49620800-49646800	Weak transcription	Hela-S3	cervix
12	chr10:49620800-49647000	Weak transcription	NHDF-Ad	bronchial
13	chr10:49620800-49647600	Weak transcription	Colonic Mucosa	Colon
14	chr10:49620800-49652400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:49621000-49638400	Weak transcription	Fetal Stomach	stomach
17	chr10:49621000-49638800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:49621200-49638400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:49621200-49638800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:49621200-49641600	Weak transcription	Small Intestine	intestine
21	chr10:49621200-49641800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:49621200-49643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:49621200-49647000	Weak transcription	Fetal Intestine Small	intestine
24	chr10:49621200-49647400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:49621200-49647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:49621400-49637200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:49621400-49638000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:49621400-49641600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:49621400-49641800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:49621400-49643600	Weak transcription	Fetal Brain Male	brain
32	chr10:49621400-49644000	Weak transcription	Fetal Brain Female	brain
33	chr10:49621400-49647600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:49621400-49650800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:49621400-49652200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
37	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
38	chr10:49621600-49635800	Weak transcription	Fetal Kidney	kidney
39	chr10:49621600-49636200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:49621600-49638800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:49621600-49643600	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:49621600-49647800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:49621600-49652200	Weak transcription	Fetal Heart	heart
44	chr10:49623000-49647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:49623400-49641400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:49623400-49646600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:49624200-49642600	Weak transcription	Fetal Intestine Large	intestine
48	chr10:49624400-49638600	Weak transcription	Fetal Lung	lung
49	chr10:49624600-49664800	Weak transcription	Gastric	stomach
50	chr10:49624800-49635600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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