Variant report

Variant	rs1867586
Chromosome Location	chr10:49658943-49658944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49656960..49659502-chr10:49666267..49668119,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17010208	0.84[EUR][1000 genomes]
rs17010407	0.92[EUR][1000 genomes]
rs17010430	0.92[EUR][1000 genomes]
rs17010447	0.92[EUR][1000 genomes]
rs17010454	0.92[EUR][1000 genomes]
rs17010455	0.92[EUR][1000 genomes]
rs17010496	0.91[EUR][1000 genomes]
rs17697972	0.92[EUR][1000 genomes]
rs3730160	0.92[EUR][1000 genomes]
rs3855904	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57508520	0.92[EUR][1000 genomes]
rs58676018	0.92[EUR][1000 genomes]
rs60992548	0.92[EUR][1000 genomes]
rs61838668	0.92[EUR][1000 genomes]
rs61838669	0.88[EUR][1000 genomes]
rs61838672	0.92[EUR][1000 genomes]
rs61838673	0.92[EUR][1000 genomes]
rs61838677	0.92[EUR][1000 genomes]
rs61838697	0.92[EUR][1000 genomes]
rs61838698	0.92[EUR][1000 genomes]
rs61838700	0.92[EUR][1000 genomes]
rs61838701	0.92[EUR][1000 genomes]
rs61838703	0.89[EUR][1000 genomes]
rs61838704	0.92[EUR][1000 genomes]
rs61838707	1.00[EUR][1000 genomes]
rs61838708	0.96[EUR][1000 genomes]
rs61838722	0.92[EUR][1000 genomes]
rs61838723	0.92[EUR][1000 genomes]
rs61838724	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838725	0.84[EUR][1000 genomes]
rs61838726	0.91[EUR][1000 genomes]
rs61838728	0.91[EUR][1000 genomes]
rs61838730	0.91[EUR][1000 genomes]
rs61838731	0.91[EUR][1000 genomes]
rs61838735	0.91[EUR][1000 genomes]
rs61840548	0.84[EUR][1000 genomes]
rs61840549	0.84[EUR][1000 genomes]
rs61840550	0.84[EUR][1000 genomes]
rs61840556	0.87[EUR][1000 genomes]
rs61840558	0.92[EUR][1000 genomes]
rs7089077	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
3	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
5	chr10:49624600-49664800	Weak transcription	Gastric	stomach
6	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
7	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:49644600-49660400	Weak transcription	Brain Anterior Caudate	brain
9	chr10:49647800-49663000	Weak transcription	NHEK	skin
10	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
12	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49652000-49673000	Weak transcription	HMEC	breast
14	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:49653000-49660400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:49653200-49662400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:49653200-49663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:49653400-49659400	Weak transcription	Pancreas	Pancrea
20	chr10:49653600-49662400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:49653600-49664400	Weak transcription	Esophagus	oesophagus
22	chr10:49653600-49664600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:49656000-49661800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:49656600-49662200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr10:49656800-49662000	Strong transcription	Fetal Stomach	stomach
27	chr10:49657200-49661200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:49657400-49659600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:49657600-49660800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:49657600-49660800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:49657600-49662000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:49657600-49662600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:49657800-49659200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:49657800-49659200	Strong transcription	Ovary	ovary
35	chr10:49657800-49662200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:49657800-49664400	Strong transcription	NHLF	lung
37	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
38	chr10:49658000-49660400	Weak transcription	K562	blood
39	chr10:49658000-49661800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:49658000-49664400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:49658200-49659200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:49658200-49659200	Weak transcription	NHDF-Ad	bronchial
43	chr10:49658200-49660400	Weak transcription	HSMM	muscle
44	chr10:49658200-49660400	Weak transcription	NH-A	brain
45	chr10:49658200-49663400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:49658200-49664200	Weak transcription	Adipose Nuclei	Adipose
47	chr10:49658200-49664200	Weak transcription	HUVEC	blood vessel
48	chr10:49658200-49664400	Weak transcription	Right Ventricle	heart
49	chr10:49658400-49659000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:49658400-49662000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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