Variant report

Variant	rs61838669
Chromosome Location	chr10:49552097-49552098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49551581..49553904-chr10:49558075..49560720,3	K562	blood:
2	chr10:49516332..49518147-chr10:49551001..49553402,2	MCF-7	breast:
3	chr10:49523430..49525253-chr10:49550597..49552808,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs17010208	0.88[EUR][1000 genomes]
rs17010407	0.96[EUR][1000 genomes]
rs17010430	0.96[EUR][1000 genomes]
rs17010447	0.96[EUR][1000 genomes]
rs17010454	0.96[EUR][1000 genomes]
rs17010455	0.96[EUR][1000 genomes]
rs17697972	0.96[EUR][1000 genomes]
rs1867586	0.88[EUR][1000 genomes]
rs3730160	0.96[EUR][1000 genomes]
rs3855904	0.84[EUR][1000 genomes]
rs57508520	0.96[EUR][1000 genomes]
rs58676018	0.96[EUR][1000 genomes]
rs60992548	0.96[EUR][1000 genomes]
rs61838668	0.96[EUR][1000 genomes]
rs61838672	0.96[EUR][1000 genomes]
rs61838673	0.96[EUR][1000 genomes]
rs61838677	0.96[EUR][1000 genomes]
rs61838697	0.96[EUR][1000 genomes]
rs61838698	0.96[EUR][1000 genomes]
rs61838700	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61838701	0.96[EUR][1000 genomes]
rs61838703	0.92[EUR][1000 genomes]
rs61838704	0.96[EUR][1000 genomes]
rs61838707	0.88[EUR][1000 genomes]
rs61838708	0.84[EUR][1000 genomes]
rs61838722	0.80[EUR][1000 genomes]
rs61838723	0.80[EUR][1000 genomes]
rs61840548	0.88[EUR][1000 genomes]
rs61840549	0.88[EUR][1000 genomes]
rs61840550	0.88[EUR][1000 genomes]
rs61840556	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61840558	0.96[EUR][1000 genomes]
rs7089077	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49516400-49559600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:49530800-49554600	Weak transcription	Fetal Brain Male	brain
3	chr10:49539200-49555000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:49539600-49553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:49540400-49554000	Weak transcription	Pancreas	Pancrea
6	chr10:49541000-49554000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:49541200-49559400	Weak transcription	Fetal Lung	lung
8	chr10:49541400-49553800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:49542000-49554000	Weak transcription	Fetal Thymus	thymus
10	chr10:49542800-49568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:49543000-49553800	Weak transcription	Right Ventricle	heart
12	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
13	chr10:49543200-49554800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:49543200-49554800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:49545800-49555800	Weak transcription	Primary T cells from cord blood	blood
16	chr10:49547000-49553600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:49549000-49557000	Weak transcription	HSMMtube	muscle
18	chr10:49549200-49555200	Weak transcription	Dnd41	blood
19	chr10:49550200-49552200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:49550200-49553800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:49550400-49560800	Weak transcription	Psoas Muscle	Psoas
22	chr10:49551000-49552200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:49551000-49552600	Enhancers	Fetal Heart	heart
24	chr10:49551000-49552600	Enhancers	Left Ventricle	heart
25	chr10:49551200-49552200	Enhancers	Brain Substantia Nigra	brain
26	chr10:49551200-49552600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:49551200-49552600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr10:49551200-49552600	Enhancers	NHDF-Ad	bronchial
29	chr10:49551400-49552200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:49551400-49552600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:49551600-49552400	Weak transcription	Ovary	ovary
32	chr10:49551600-49552600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:49551600-49553000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr10:49551600-49553600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:49551800-49552200	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr10:49551800-49552200	Enhancers	NHLF	lung
37	chr10:49551800-49552400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr10:49551800-49552400	Enhancers	Adipose Nuclei	Adipose
39	chr10:49551800-49552400	Enhancers	Fetal Brain Female	brain
40	chr10:49551800-49552600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:49551800-49552600	Enhancers	GM12878-XiMat	blood
42	chr10:49551800-49552600	Enhancers	Osteobl	bone
43	chr10:49551800-49553000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:49552000-49552200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:49552000-49552200	Enhancers	A549	lung
46	chr10:49552000-49552200	Enhancers	NH-A	brain
47	chr10:49552000-49552400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:49552000-49552400	Enhancers	Colon Smooth Muscle	Colon
49	chr10:49552000-49552600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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