Variant report

Variant	rs61838708
Chromosome Location	chr10:49657178-49657179
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49656960..49659502-chr10:49666267..49668119,2	MCF-7	breast:
2	chr10:49655464..49657774-chr10:49727812..49730499,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17010208	0.81[EUR][1000 genomes]
rs17010407	0.88[EUR][1000 genomes]
rs17010430	0.88[EUR][1000 genomes]
rs17010447	0.88[EUR][1000 genomes]
rs17010454	0.88[EUR][1000 genomes]
rs17010455	0.88[EUR][1000 genomes]
rs17010496	0.88[EUR][1000 genomes]
rs17697972	0.88[EUR][1000 genomes]
rs1867586	0.96[EUR][1000 genomes]
rs3730160	0.88[EUR][1000 genomes]
rs3855904	0.92[EUR][1000 genomes]
rs57508520	0.88[EUR][1000 genomes]
rs58676018	0.88[EUR][1000 genomes]
rs60992548	0.88[EUR][1000 genomes]
rs61838668	0.88[EUR][1000 genomes]
rs61838669	0.84[EUR][1000 genomes]
rs61838672	0.88[EUR][1000 genomes]
rs61838673	0.88[EUR][1000 genomes]
rs61838677	0.88[EUR][1000 genomes]
rs61838697	0.88[EUR][1000 genomes]
rs61838698	0.88[EUR][1000 genomes]
rs61838700	0.88[EUR][1000 genomes]
rs61838701	0.88[EUR][1000 genomes]
rs61838703	0.85[EUR][1000 genomes]
rs61838704	0.88[EUR][1000 genomes]
rs61838707	0.96[EUR][1000 genomes]
rs61838722	0.88[EUR][1000 genomes]
rs61838723	0.88[EUR][1000 genomes]
rs61838724	0.84[EUR][1000 genomes]
rs61838725	0.80[EUR][1000 genomes]
rs61838726	0.88[EUR][1000 genomes]
rs61838728	0.88[EUR][1000 genomes]
rs61838730	0.88[EUR][1000 genomes]
rs61838731	0.88[EUR][1000 genomes]
rs61838735	0.88[EUR][1000 genomes]
rs61840548	0.81[EUR][1000 genomes]
rs61840549	0.81[EUR][1000 genomes]
rs61840550	0.81[EUR][1000 genomes]
rs61840556	0.84[EUR][1000 genomes]
rs61840558	0.88[EUR][1000 genomes]
rs7089077	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
2	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
3	chr10:49619000-49664200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:49620800-49658600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49621200-49657400	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:49621400-49658600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:49621400-49664400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:49624600-49664800	Weak transcription	Gastric	stomach
9	chr10:49626600-49664400	Weak transcription	Spleen	Spleen
10	chr10:49639600-49657800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:49644200-49664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:49644600-49660400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:49646200-49657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:49647800-49663000	Weak transcription	NHEK	skin
15	chr10:49647800-49664400	Weak transcription	Fetal Intestine Small	intestine
16	chr10:49648000-49664400	Weak transcription	Right Atrium	heart
17	chr10:49648600-49657800	Weak transcription	Ovary	ovary
18	chr10:49650600-49664000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:49651800-49657200	Weak transcription	HSMMtube	muscle
20	chr10:49652000-49673000	Weak transcription	HMEC	breast
21	chr10:49652600-49658200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:49652600-49664200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:49653000-49660400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:49653000-49673600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:49653200-49662400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:49653200-49663600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:49653400-49657800	Weak transcription	Right Ventricle	heart
28	chr10:49653400-49659400	Weak transcription	Pancreas	Pancrea
29	chr10:49653600-49662400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:49653600-49664400	Weak transcription	Esophagus	oesophagus
31	chr10:49653600-49664600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:49654000-49657200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:49655600-49657400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:49656000-49657600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:49656000-49661800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr10:49656200-49657600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:49656400-49658400	Genic enhancers	Osteobl	bone
39	chr10:49656600-49657200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr10:49656600-49657200	Genic enhancers	K562	blood
41	chr10:49656600-49657400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:49656600-49657600	Enhancers	HSMM	muscle
43	chr10:49656600-49658200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:49656600-49658200	Enhancers	HUVEC	blood vessel
45	chr10:49656600-49658200	Enhancers	NH-A	brain
46	chr10:49656600-49658200	Enhancers	NHDF-Ad	bronchial
47	chr10:49656600-49658400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:49656600-49658600	Genic enhancers	Muscle Satellite Cultured Cells	--
49	chr10:49656600-49662200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr10:49656800-49657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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