Variant report

Variant	rs58555605
Chromosome Location	chr10:49410426-49410427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508900	0.81[AMR][1000 genomes]
rs17009540	0.81[AMR][1000 genomes]
rs17009545	0.81[AMR][1000 genomes]
rs17010723	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011006	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011019	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011052	0.93[EUR][1000 genomes]
rs17011060	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17770021	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56104390	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56805036	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61108444	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61204436	0.81[EUR][1000 genomes]
rs61450644	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840033	0.83[EUR][1000 genomes]
rs61840039	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61840043	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840044	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840045	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840047	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840494	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840495	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840496	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840497	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61840499	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840503	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61840510	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497860	chr10:49002272-49431037	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831864	chr10:49299274-49450299	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49396000-49420800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:49410400-49410600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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