Variant report
| Variant | rs56814746 |
|---|---|
| Chromosome Location | chr4:18679067-18679068 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:149857381..149859759-chr4:18677015..18679993,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000184270 | Chromatin interaction |
| ENSG00000178096 | Chromatin interaction |
| ENSG00000184260 | Chromatin interaction |
| ENSG00000184678 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs28671154 | 1.00[EUR][1000 genomes] |
| rs58948052 | 1.00[EUR][1000 genomes] |
| rs60985533 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72619143 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72619145 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72619146 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72619147 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72619148 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73102316 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv532708 | chr4:18596861-19176896 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv878722 | chr4:18668957-18741988 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv878723 | chr4:18668957-19005988 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
