Variant report

Variant	rs72619148
Chromosome Location	chr4:18696835-18696836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28671154	1.00[EUR][1000 genomes]
rs56814746	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58948052	1.00[EUR][1000 genomes]
rs60985533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619143	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72619145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv878722	chr4:18668957-18741988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18688000-18697600	Weak transcription	Gastric	stomach
2	chr4:18693800-18698200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:18694000-18697800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:18694000-18698600	Weak transcription	GM12878-XiMat	blood
5	chr4:18694000-18700200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:18694000-18700400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:18694200-18699800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:18695200-18699800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:18695400-18699200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:18695600-18699600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:18695600-18700000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:18695800-18699400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:18696600-18698000	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links