Variant report

Variant	rs72619146
Chromosome Location	chr4:18691674-18691675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28671154	1.00[EUR][1000 genomes]
rs56814746	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58948052	1.00[EUR][1000 genomes]
rs60985533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619143	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72619145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv878722	chr4:18668957-18741988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18688000-18697600	Weak transcription	Gastric	stomach
2	chr4:18690800-18693600	Enhancers	Fetal Kidney	kidney
3	chr4:18691200-18691800	Enhancers	Fetal Heart	heart
4	chr4:18691200-18692000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:18691200-18692000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:18691200-18692200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:18691200-18692200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:18691200-18692200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:18691200-18693000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr4:18691200-18693000	Enhancers	Colon Smooth Muscle	Colon
11	chr4:18691200-18693600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:18691200-18693800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:18691200-18693800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:18691200-18694000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:18691200-18694000	Enhancers	Fetal Lung	lung
16	chr4:18691400-18691800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr4:18691400-18691800	Enhancers	Fetal Stomach	stomach
18	chr4:18691400-18692200	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:18691400-18692400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:18691400-18692400	Enhancers	Rectal Smooth Muscle	rectum
21	chr4:18691400-18692600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:18691400-18692800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr4:18691400-18693200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:18691400-18694200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:18691600-18693600	Weak transcription	H9 Cell Line	embryonic stem cell

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