Variant report

Variant	rs60985533
Chromosome Location	chr4:18686802-18686803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28671154	1.00[EUR][1000 genomes]
rs56814746	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58948052	1.00[EUR][1000 genomes]
rs72619143	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72619145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72619148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73102316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv878722	chr4:18668957-18741988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv878723	chr4:18668957-19005988	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18685600-18687800	Weak transcription	Fetal Intestine Large	intestine
2	chr4:18685800-18687600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:18686400-18688000	Enhancers	HUVEC	blood vessel
4	chr4:18686600-18687200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:18686800-18687200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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