Variant report

Variant	rs56825916
Chromosome Location	chr5:151684979-151684980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs55945305	0.83[AFR][1000 genomes]
rs56838880	0.81[AFR][1000 genomes]
rs57467196	0.83[AFR][1000 genomes]
rs58429100	0.83[AFR][1000 genomes]
rs58663632	0.81[AFR][1000 genomes]
rs59420569	0.83[AFR][1000 genomes]
rs6579931	0.81[AFR][1000 genomes]
rs73796838	0.88[AFR][1000 genomes]
rs73796851	0.90[AFR][1000 genomes]
rs73796852	0.90[AFR][1000 genomes]
rs73796868	0.81[AFR][1000 genomes]
rs73797041	0.83[AFR][1000 genomes]
rs73797043	0.83[AFR][1000 genomes]
rs73797047	0.83[AFR][1000 genomes]
rs73797048	0.83[AFR][1000 genomes]
rs73797051	0.83[AFR][1000 genomes]
rs73797052	0.83[AFR][1000 genomes]
rs73797053	0.83[AFR][1000 genomes]
rs73797054	0.83[AFR][1000 genomes]
rs73797055	0.83[AFR][1000 genomes]
rs73797056	0.83[AFR][1000 genomes]
rs73797057	0.83[AFR][1000 genomes]
rs73797058	0.83[AFR][1000 genomes]
rs73797060	0.83[AFR][1000 genomes]
rs73798513	0.81[AFR][1000 genomes]
rs73798515	0.81[AFR][1000 genomes]
rs73798928	0.83[AFR][1000 genomes]
rs73798929	0.83[AFR][1000 genomes]
rs73798930	0.83[AFR][1000 genomes]
rs7709660	0.88[AFR][1000 genomes]
rs7735575	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151684200-151687600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151684400-151686000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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