Variant report

Variant	rs73797060
Chromosome Location	chr5:151668048-151668049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151572609..151573576-chr5:151667738..151668966,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56825916	0.83[AFR][1000 genomes]
rs56838880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58429100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs58663632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579931	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884006	1.00[AMR][1000 genomes]
rs73796838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796851	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797048	1.00[AFR][1000 genomes]
rs73797050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798513	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798515	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799608	1.00[AMR][1000 genomes]
rs7709660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735575	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151667000-151669000	Enhancers	Left Ventricle	heart
2	chr5:151667000-151669400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:151667200-151668600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr5:151667200-151669200	Enhancers	Right Atrium	heart
5	chr5:151667200-151669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:151667400-151668600	Enhancers	Colon Smooth Muscle	Colon
7	chr5:151667800-151669400	Enhancers	Adipose Nuclei	Adipose
8	chr5:151668000-151668200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr5:151668000-151668400	Enhancers	Fetal Muscle Trunk	muscle
10	chr5:151668000-151668400	Enhancers	Lung	lung
11	chr5:151668000-151668800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:151668000-151668800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:151668000-151668800	Enhancers	Fetal Stomach	stomach
14	chr5:151668000-151669000	Enhancers	Aorta	Aorta
15	chr5:151668000-151669000	Enhancers	Liver	Liver
16	chr5:151668000-151669000	Enhancers	Ovary	ovary
17	chr5:151668000-151669200	Enhancers	Fetal Muscle Leg	muscle
18	chr5:151668000-151669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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