Variant report

Variant	rs73797050
Chromosome Location	chr5:151665889-151665890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151523879..151524822-chr5:151665463..151666473,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56838880	1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58429100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs58663632	1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579931	1.00[AMR][1000 genomes]
rs6884006	1.00[AMR][1000 genomes]
rs73796838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796852	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796868	1.00[AMR][1000 genomes]
rs73797041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797048	0.95[AFR][1000 genomes]
rs73797051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798513	1.00[AMR][1000 genomes]
rs73798515	1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799608	1.00[AMR][1000 genomes]
rs7709660	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151665600-151667200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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