Variant report
| Variant | rs55641031 |
|---|---|
| Chromosome Location | chr5:151658156-151658157 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:151657760..151660669-chr5:151664036..151665765,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs55932023 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55945305 | 1.00[AMR][1000 genomes] |
| rs56838880 | 1.00[AMR][1000 genomes] |
| rs57011103 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57467196 | 1.00[AMR][1000 genomes] |
| rs58429100 | 1.00[AMR][1000 genomes] |
| rs58442791 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58663632 | 1.00[AMR][1000 genomes] |
| rs59412762 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59420569 | 1.00[AMR][1000 genomes] |
| rs6579931 | 1.00[AMR][1000 genomes] |
| rs6884006 | 1.00[AMR][1000 genomes] |
| rs73796838 | 1.00[AMR][1000 genomes] |
| rs73796851 | 1.00[AMR][1000 genomes] |
| rs73796852 | 1.00[AMR][1000 genomes] |
| rs73796868 | 1.00[AMR][1000 genomes] |
| rs73797041 | 1.00[AMR][1000 genomes] |
| rs73797043 | 1.00[AMR][1000 genomes] |
| rs73797047 | 1.00[AMR][1000 genomes] |
| rs73797050 | 1.00[AMR][1000 genomes] |
| rs73797051 | 1.00[AMR][1000 genomes] |
| rs73797052 | 1.00[AMR][1000 genomes] |
| rs73797053 | 1.00[AMR][1000 genomes] |
| rs73797054 | 1.00[AMR][1000 genomes] |
| rs73797055 | 1.00[AMR][1000 genomes] |
| rs73797056 | 1.00[AMR][1000 genomes] |
| rs73797057 | 1.00[AMR][1000 genomes] |
| rs73797058 | 1.00[AMR][1000 genomes] |
| rs73797060 | 1.00[AMR][1000 genomes] |
| rs73798513 | 1.00[AMR][1000 genomes] |
| rs73798515 | 1.00[AMR][1000 genomes] |
| rs73798923 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73798928 | 1.00[AMR][1000 genomes] |
| rs73798929 | 1.00[AMR][1000 genomes] |
| rs73798930 | 1.00[AMR][1000 genomes] |
| rs73799608 | 1.00[AMR][1000 genomes] |
| rs7709660 | 1.00[AMR][1000 genomes] |
| rs7735575 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv830519 | chr5:151588627-151800192 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151657600-151664000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
