Variant report

Variant	rs73799608
Chromosome Location	chr5:151754024-151754025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	1.00[AMR][1000 genomes]
rs56838880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	1.00[AMR][1000 genomes]
rs58429100	1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs58663632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	1.00[AMR][1000 genomes]
rs6579931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884006	1.00[AMR][1000 genomes]
rs73796838	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796852	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796868	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797041	1.00[AMR][1000 genomes]
rs73797043	1.00[AMR][1000 genomes]
rs73797047	1.00[AMR][1000 genomes]
rs73797050	1.00[AMR][1000 genomes]
rs73797051	1.00[AMR][1000 genomes]
rs73797052	1.00[AMR][1000 genomes]
rs73797053	1.00[AMR][1000 genomes]
rs73797054	1.00[AMR][1000 genomes]
rs73797055	1.00[AMR][1000 genomes]
rs73797056	1.00[AMR][1000 genomes]
rs73797057	1.00[AMR][1000 genomes]
rs73797058	1.00[AMR][1000 genomes]
rs73797060	1.00[AMR][1000 genomes]
rs73798513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	1.00[AMR][1000 genomes]
rs73798929	1.00[AMR][1000 genomes]
rs73798930	1.00[AMR][1000 genomes]
rs7709660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2763511	chr5:151737559-151776755	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151753800-151755000	Enhancers	Brain Substantia Nigra	brain
2	chr5:151753800-151756800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr5:151754000-151754400	Enhancers	Brain Hippocampus Middle	brain

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