Variant report

Variant	rs73796838
Chromosome Location	chr5:151677311-151677312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151668177..151670691-chr5:151675997..151677580,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56825916	0.88[AFR][1000 genomes]
rs56838880	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58429100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs58663632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579931	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884006	1.00[AMR][1000 genomes]
rs73796851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797041	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797048	0.95[AFR][1000 genomes]
rs73797050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797055	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798513	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798515	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799608	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735575	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151676800-151678400	Enhancers	Placenta	Placenta
2	chr5:151677200-151677600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:151677200-151678200	Weak transcription	Placenta Amnion	Placenta Amnion

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