Variant report

Variant	rs6884006
Chromosome Location	chr5:151657335-151657336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	1.00[AMR][1000 genomes]
rs56838880	1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	1.00[AMR][1000 genomes]
rs58429100	1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs58663632	1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	1.00[AMR][1000 genomes]
rs6579931	1.00[AMR][1000 genomes]
rs73796838	1.00[AMR][1000 genomes]
rs73796851	1.00[AMR][1000 genomes]
rs73796852	1.00[AMR][1000 genomes]
rs73796868	1.00[AMR][1000 genomes]
rs73797041	1.00[AMR][1000 genomes]
rs73797043	1.00[AMR][1000 genomes]
rs73797047	1.00[AMR][1000 genomes]
rs73797050	1.00[AMR][1000 genomes]
rs73797051	1.00[AMR][1000 genomes]
rs73797052	1.00[AMR][1000 genomes]
rs73797053	1.00[AMR][1000 genomes]
rs73797054	1.00[AMR][1000 genomes]
rs73797055	1.00[AMR][1000 genomes]
rs73797056	1.00[AMR][1000 genomes]
rs73797057	1.00[AMR][1000 genomes]
rs73797058	1.00[AMR][1000 genomes]
rs73797060	1.00[AMR][1000 genomes]
rs73798513	1.00[AMR][1000 genomes]
rs73798515	1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	1.00[AMR][1000 genomes]
rs73798929	1.00[AMR][1000 genomes]
rs73798930	1.00[AMR][1000 genomes]
rs73799608	1.00[AMR][1000 genomes]
rs7709660	1.00[AMR][1000 genomes]
rs7735575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151656800-151657600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr5:151657000-151657400	Bivalent Enhancer	Fetal Brain Male	brain
3	chr5:151657200-151657400	Enhancers	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links