Variant report

Variant	rs58663632
Chromosome Location	chr5:151729411-151729412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151728938..151729896-chr5:151885133..151885910,3	MCF-7	breast:
2	chr5:151522014..151522696-chr5:151729134..151730175,3	MCF-7	breast:
3	chr5:151650666..151651425-chr5:151728944..151730018,3	MCF-7	breast:
4	chr5:151204608..151205517-chr5:151728966..151729819,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55641031	1.00[AMR][1000 genomes]
rs55932023	1.00[AMR][1000 genomes]
rs55945305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56825916	0.81[AFR][1000 genomes]
rs56838880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57011103	1.00[AMR][1000 genomes]
rs57467196	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58429100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442791	1.00[AMR][1000 genomes]
rs59412762	1.00[AMR][1000 genomes]
rs59420569	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884006	1.00[AMR][1000 genomes]
rs73796838	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796851	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73796868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797048	0.83[AFR][1000 genomes]
rs73797050	1.00[AMR][1000 genomes]
rs73797051	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797054	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797055	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797057	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797058	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73797060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798923	1.00[AMR][1000 genomes]
rs73798928	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799608	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151728800-151731200	Enhancers	Stomach Mucosa	stomach
2	chr5:151729000-151730200	Enhancers	Fetal Stomach	stomach
3	chr5:151729000-151730400	Enhancers	Fetal Lung	lung

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