Variant report

Variant	rs56867696
Chromosome Location	chr10:98646717-98646718
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10437452	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11188937	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188939	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188940	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188947	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188954	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188955	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188956	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188967	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188971	0.93[EUR][1000 genomes]
rs11188978	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12241405	0.91[EUR][1000 genomes]
rs12241564	0.87[EUR][1000 genomes]
rs12242330	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243551	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244490	0.89[EUR][1000 genomes]
rs12246067	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247344	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249381	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249427	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249891	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252424	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252435	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256424	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257413	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258355	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258469	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259265	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261278	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261881	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262784	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263331	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264014	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12265242	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266068	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266185	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267926	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268216	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268272	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376965	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112175	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112190	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104785	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28439735	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505353	0.86[EUR][1000 genomes]
rs28758432	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394767	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57408003	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57501540	0.91[EUR][1000 genomes]
rs57716318	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58270704	0.81[EUR][1000 genomes]
rs58376960	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59751908	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59938221	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59999388	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60576681	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492214	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584101	0.89[EUR][1000 genomes]
rs7071211	0.89[EUR][1000 genomes]
rs7072273	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073150	0.86[EUR][1000 genomes]
rs7082316	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082838	0.95[EUR][1000 genomes]
rs7085822	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085851	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086875	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7090441	0.91[EUR][1000 genomes]
rs7090690	0.89[EUR][1000 genomes]
rs74153734	0.89[EUR][1000 genomes]
rs7893144	0.83[ASN][1000 genomes]
rs7893325	0.86[EUR][1000 genomes]
rs7893564	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894138	0.93[EUR][1000 genomes]
rs7894418	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895914	0.86[EUR][1000 genomes]
rs7906294	0.93[EUR][1000 genomes]
rs7910221	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918085	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920238	0.89[EUR][1000 genomes]
rs7921193	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921216	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921885	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98649800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
3	chr10:98617200-98651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:98622400-98652200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:98622600-98648800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:98624800-98649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:98624800-98649200	Weak transcription	NHEK	skin
9	chr10:98624800-98649800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:98624800-98652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:98624800-98656800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:98624800-98696000	Weak transcription	K562	blood
13	chr10:98626000-98649800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:98627400-98647200	Weak transcription	Fetal Stomach	stomach
15	chr10:98631200-98649200	Weak transcription	Lung	lung
16	chr10:98632400-98650800	Weak transcription	Fetal Brain Male	brain
17	chr10:98633000-98656600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:98633800-98652200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:98634200-98649200	Weak transcription	Brain Germinal Matrix	brain
21	chr10:98634600-98651800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:98635400-98651000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:98636800-98683400	Weak transcription	Osteobl	bone
24	chr10:98637400-98708800	Weak transcription	NH-A	brain
25	chr10:98637600-98649600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:98638200-98649000	Weak transcription	Fetal Kidney	kidney
27	chr10:98638400-98649800	Weak transcription	HMEC	breast
28	chr10:98638800-98649800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:98638800-98654200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:98639600-98649200	Weak transcription	Small Intestine	intestine
31	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
32	chr10:98640200-98649200	Weak transcription	Thymus	Thymus
33	chr10:98640400-98649200	Weak transcription	Gastric	stomach
34	chr10:98640400-98649200	Weak transcription	Left Ventricle	heart
35	chr10:98640600-98646800	Weak transcription	A549	lung
36	chr10:98640600-98650400	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
39	chr10:98640800-98649200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:98640800-98651400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:98642400-98649200	Weak transcription	Fetal Brain Female	brain
42	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:98643400-98649000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:98643600-98655000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr10:98644200-98647000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr10:98644200-98647000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:98644200-98652400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:98644600-98647000	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:98644600-98649200	Weak transcription	Fetal Lung	lung
50	chr10:98644600-98649600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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